Oleksandra Kukharenko

Full CV (03.2017).

•  Analysis of the Dynamics of Protein Conformations: Structural and Mechanistic Aspects of Protein Folding
•  Reservoir Computing with Application to Molecular Dynamic Simulation Data (in collaboration with Prof. Dr. Lyudmila Grigoryeva)
• Quantitative Analysis of Linker Histones Ubiquitylation based on Molecular Simulation Data

2016

Using Dimensionality Reduction to Systematically Expand Conformational Sampling of Intrinsically Disordered Peptides, O. Kukharenko, K. Sawade, J. Steuer, and C. Peter, Journal of Chemical Theory and Computation, 12 ,  4726-4734, 2016.[doi]

2014

Control in Systems of Delay Hyperbolic Equations, O. Kukharenko,  Advances in Dynamical Systems and Applications, 9 (2), 199-211, 2014.[pdf]

2012

Solution of the first boundary-value problem for a system of autonomous second-order linear partial differential equations of parabolic type with a single delay, J. Diblı́k, D. Khusainov, O. Kukharenko, and Z. Svoboda,  Abstract and Applied Analysis, 2012, Article ID 219040, 27 pages,  2012.[doi]

Representation of the Solution for Linear System of Delay Equations with Distributed Parameters, J. Diblı́k, D. Khusainov, and O. Kukharenko,  Nonlinear Dynamics and Systems Theory, 12 (2), 251-268, 2012.[pdf]

Application of homotopy perturbation method to solving singular initial value problems, H. Halfarová, A. Kukharenko, and Z. Šmarda,  APLIMAT – Journal of Applied Mathematics, 5 (2), 69-75, 2012.[pdf]

2011

Control of Solutions of Parabolic Linear Equation, O. Kukharenko, and D. Khusainov,   Bulletin of Institute of Mathematic of Ukraine, 8 (2), 112-131,  2011. (in Russian)

Solution of the Dirichlet Boundary Value Problem for One System of Linear Partial Differential Equations with Delay, D. Khusainov, J. Diblı́k, and O. Kukharenko,   Proceedings of the 7th Conference on Mathematics and Physics on Technical Universities, 235-242,  2011.

Delayed Exponential Functions and Their Application to Representations of Solutions of Linear Equations with Constant Coefficients and with Single Delay, J. Diblı́k, B. Morávková, D. Khusainov, and A. Kukharenko,   Proceedings of MMES'11/DEEE'11/COMATIA'11, 82-87,  2011.[url]

Solution of the Cauchy Problem for Oscillatory Equation with Delay, O. Kukharenko,  Bulletin of the Kyiv National Taras Shevchenko University (Cybernetics), 26-30, 2011.[arXiv]

Representation of solution of the first boundary value problem for delay systems, O. Kukharenko, J. Diblı́k, and D. Khusainov,   Bulletin of the Kyiv National Taras Shevchenko University (Physic and Mathematics), 1, 59-62,  2011. (in Ukrainian)

Existence conditions of solution of the first boundary value problem for system of delay equations, O. Kukharenko, Bulletin of the Kyiv National Taras Shevchenko University (Physic and Mathematics), 1, 125-130,  2011. (in Ukrainian)

2010

Representation of the Solution for the Vibrating Delay System in the Form of Series, O. Kukharenko, D. Khusainov, and M. Verejkina,  Bulletin of the Kyiv National Taras Shevchenko University, 15-22,  2011. (in Ukrainian)